Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs2394654 | chr10:71870114 | C/T | 0 | 490 | 5.8 | 14 | 16.65 | KM Plot |
| THCA | rs2412343 | chr11:4164608 | G/A | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs2412601 | chr15:41419325 | G/A | 0.000173 | 469 | 15.02 | 16.3 | 17.03 | KM Plot |
| THCA | rs2414280 | chr15:54236730 | A/T | 1.41E-7 | 490 | 13.22 | 17.83 | 15.33 | KM Plot |
| THCA | rs2414281 | chr15:54233998 | A/G | 1.11E-16 | 490 | 15.65 | 17.83 | 11 | KM Plot |
| THCA | rs2415299 | chr14:36052290 | G/A | 5.27E-6 | 486 | 16.2 | 16.37 | 8.33 | KM Plot |
| THCA | rs2417402 | chr12:15055874 | A/C | 5.3E-5 | 472 | 17.03 | 14.87 | 11.5 | KM Plot |
| THCA | rs2431635 | chr10:12875451 | G/T | 0 | 490 | 15.7 | 17.53 | 13.07 | KM Plot |
| THCA | rs2450123 | chr11:77952771 | T/C | 2.88E-5 | 485 | 16.4 | 15.23 | 12.47 | KM Plot |
| THCA | rs2456015 | chr15:65830518 | C/T | 0.00011 | 483 | 15.98 | 14.97 | 16.3 | KM Plot |
| THCA | rs2456591 | chr1:119112556 | G/C | 6.39E-5 | 484 | 13.97 | 16.2 | 15.87 | KM Plot |
| THCA | rs2460334 | chr8:12874451 | T/G | 5.91E-13 | 486 | 16.2 | 15.13 | 8.1 | KM Plot |
| THCA | rs2460336 | chr8:12873064 | T/C | 0 | 490 | 16.07 | 14.47 | 13.33 | KM Plot |
| THCA | rs2460337 | chr8:12873051 | G/A | 0 | 490 | 16.07 | 14.47 | 13.33 | KM Plot |
| THCA | rs2460920 | chr8:12872510 | G/T | 4.79E-13 | 488 | 16.02 | 15.13 | 10.4 | KM Plot |